FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane4_Index5_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 20667670 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 4323830 | 2.6050825 | 5.3674736 | 1 |
| CCTGG | 4338995 | 2.5980592 | 6.1553907 | 1 |
| GAAGA | 4470185 | 2.5753295 | 5.0646486 | 2 |
| CTTCT | 4539895 | 2.5477293 | 5.585231 | 1 |
| CTGGA | 4208355 | 2.4640496 | 8.519219 | 1 |
| TCCAG | 4088825 | 2.3849275 | 5.4287643 | 2 |
| CTCCT | 4013930 | 2.317891 | 7.000723 | 1 |
| CTGGG | 3807410 | 2.288495 | 8.322726 | 1 |
| CAGGA | 3802520 | 2.2402766 | 5.381181 | 1 |
| CTTCA | 3894115 | 2.1989188 | 5.6499047 | 1 |
| CTCCA | 3778315 | 2.1954033 | 7.3830724 | 1 |
| CCCAG | 3655060 | 2.193749 | 6.9411044 | 1 |
| CAGAA | 3696290 | 2.121353 | 5.0436068 | 1 |
| CTCTG | 3560505 | 2.0639312 | 6.3485436 | 1 |
| CTGGC | 3138015 | 1.8789488 | 5.212755 | 1 |
| TGGAA | 3271010 | 1.8728205 | 5.0005817 | 2 |
| CTGAA | 3279535 | 1.8705363 | 5.5197678 | 1 |
| CTCAG | 3022830 | 1.7631545 | 5.9569354 | 1 |
| CTTTG | 3045620 | 1.7157087 | 5.104326 | 1 |
| CTGGT | 2880960 | 1.6764143 | 5.0257173 | 1 |
| CTTGG | 2810615 | 1.6354809 | 5.285266 | 1 |